Photo of Malin Larsson

Malin Larsson

Principal Research Engineer

Bioinformatician in National Bioinformatics Infrastructure Sweden (NBIS)

I work as bioinformatician in the Linköping node of National Bioinformatics Infrastructure Sweden (NBIS), which is a distributed research infrastructure supporting life sciences in Sweden. I give support to research projects based on next generation sequencing (NGS) data, where my role is to develop algorithms to analyse and visualize the data.

The main focus of my research is cancer genomics. Whole genome sequencing of tumour cells and matched normal cells is used to identify somatic mutations and chromosomal aberrations in the tumour cells that may affect tumour development.

Researchers at Linköping University are welcome to contact me for any questions about bioinformatics in their research projects.

National Bioinformatics Infrastructure Sweden (NBIS) 

Publications

2022

Völundur Hafstad, Rolf Sökilde, Jari Häkkinen, Malin Larsson, Johan Vallon-Christersson, Carlos Rovira, Helena Persson (2022) Regulatory networks and 5 partner usage of miRNA host gene fusions in breast cancer International Journal of Cancer, Vol. 151, p. 95-106 Continue to DOI

2021

Shumaila Sayyab, Anders Lundmark, Malin Larsson, Markus Ringner, Sara Nystedt, Yanara Marincevic-Zuniga, Katja Pokrovskaja Tamm, Jonas Abrahamsson, Linda Fogelstrand, Mats Heyman, Ulrika Norén-Nyström, Gudmar Lönnerholm, Arja Harila-Saari, Eva C. Berglund, Jessica Nordlund, Ann-Christine Syvänen (2021) Mutational patterns and clonal evolution from diagnosis to relapse in pediatric acute lymphoblastic leukemia Scientific Reports, Vol. 11, Article 15988 Continue to DOI
Ravi Kumar Dutta, Malin Larsson, Thomas Arnesen, Anette Heie, Martin Walz, Piero Alesina, Oliver Gimm, Peter Söderkvist (2021) X-chromosome variants are associated with aldosterone producing adenomas Scientific Reports, Vol. 11, Article 10562 Continue to DOI

2020

Maxime Garcia, Szilveszter Juhos, Malin Larsson, Pall I Olason, Marcel Martin, Jesper Eisfeldt, Sebastian DiLorenzo, Johanna Sandgren, Teresita Díaz De Ståhl, Philip Ewels, Valtteri Wirta, Monica Nistér, Max Käller, Björn Nystedt (2020) Sarek: A portable workflow for whole-genome sequencing analysis of germline and somatic variants F1000 Research, Vol. 9 Continue to DOI

2019

Irene Franco, Hafdis T. Helgadottir, Aldo Moggio, Malin Larsson, Peter Vrtańćnik, Anna Johansson, Nina Norgren, Pär Lundin, David Mas-Ponte, Johan Nordström, Torbjörn Lundgren, Peter Stenvinkel, Lars Wennberg, Fran Supek, Maria Eriksson (2019) Whole genome DNA sequencing provides an atlas of somatic mutagenesis in healthy human cells and identifies a tumor-prone cell type Genome Biology, Vol. 20, Article 285 Continue to DOI