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Jeroen van der Laak

Visiting Professor

My research aims to improve cancer diagnostics and prognostics using machine learning techniques and large data sets in Pathology.

Deep learning 

Advances in tissue slide digitization and machine learning have propelled computational pathology research. Especially the use of 'deep learning' techniques, trained with large numbers of histopathology images, has been shown to be very powerful.

Today, computer systems approach the level of humans for certain well-defined tasks in pathology. Examples are counting of mitoses for breast cancer grading and detection of lymph node metastases for tumour staging.

My research focuses on development of such deep learning algorithms. The aims are twofold:

  1. to support the pathologists' work by increasing efficiency and reducing observer bias;
  2. to identify potential new (prognostic and predictive) biomarkers to aid personalized treatment.

To be able to reach these, a number of eminent challenges still exist. An important prerequisite for development of deep learning algorithms is the availability of (both high quality and high quantity) data. A large part of the research is therefore directed at establishing collaborations, acquiring clinical data as well as human tissues, and working with expert pathologists.

Next, research into different deep learning strategies is required to develop the most optimal models.

Lastly, developed models have to be validated in routine clinical practice, to prove safety and usability.

My research aims to focus on all these different aspects, with the final aim of improving cancer diagnostics and prognostics.

Publications

2024

Joep M. A. Bogaerts, Miranda P. Steenbeek, John-Melle Bokhorst, Majke H. D. van Bommel, Luca Abete, Francesca Addante, Mariel Brinkhuis, Alicja Chrzan, Fleur Cordier, Mojgan Devouassoux-Shisheboran, Juan Fernandez-Perez, Anna Fischer, C. Blake Gilks, Angela Guerriero, Marta Jaconi, Tony G. Kleijn, Loes Kooreman, Spencer Martin, Jakob Milla, Nadine Narducci, Chara Ntala, Vinita Parkash, Christophe de Pauw, Joseph T. Rabban, Lucia Rijstenberg, Robert Rottscholl, Annette Staebler, Koen van de Vijver, Gian Franco Zannoni, Monica van Zanten, Joanne A. de Hullu, Michiel Simons, Jeroen van der Laak (2024) Assessing the impact of deep-learning assistance on the histopathological diagnosis of serous tubal intraepithelial carcinoma (STIC) in fallopian tubes The journal of pathology. Clinical research, Vol. 10, Article e70006 (Article in journal) Continue to DOI
Khrystyna Faryna, Leslie Tessier, Juan Retamero, Saikiran Bonthu, Pranab Samanta, Nitin Singhal, Solene-Florence Kammerer-Jacquet, Camelia Radulescu, Vittorio Agosti, Alexandre Collin, Xavier Farre, Jacqueline Fontugne, Rainer Grobholz, Agnes Marije Hoogland, Katia Ramos Moreira Leite, Murat Oktay, Antonio Polonia, Paromita Roy, Paulo Guilherme, Theodorus H. van der Kwast, Jolique van Ipenburg, Jeroen van der Laak, Geert Litjens (2024) Evaluation of Artificial Intelligence-Based Gleason Grading Algorithms "in the Wild" Modern Pathology, Vol. 37, Article 100563 (Article in journal) Continue to DOI
Khrystyna Faryna, Jeroen van der Laak, Geert Litjens (2024) Towards embedding stain-invariance in convolutional neural networks for H&E-stained histopathology DIGITAL AND COMPUTATIONAL PATHOLOGY, MEDICAL IMAGING 2024, Article 1293304 (Conference paper) Continue to DOI
Roberto A. Leon-Ferre, Jodi M. Carter, David Zahrieh, Jason P. Sinnwell, Roberto Salgado, Vera J. Suman, David W. Hillman, Judy C. Boughey, Krishna R. Kalari, Fergus J. Couch, James N. Ingle, Maschenka Balkenhol, Francesco Ciompi, Jeroen van der Laak, Matthew P. Goetz (2024) Automated mitotic spindle hotspot counts are highly associated with clinical outcomes in systemically untreated early-stage triple-negative breast cancer npj Breast Cancer, Vol. 10, Article 25 (Article in journal) Continue to DOI
Yiping Jiao, Jeroen van der Laak, Shadi Albarqouni, Zhang Li, Tao Tan, Abhir Bhalerao, Shenghua Cheng, Jiabo Ma, Johnathan Pocock, Josien P. W. Pluim, Navid Alemi Koohbanani, Raja Muhammad Saad Bashir, Shan E. Ahmed Raza, Sibo Liu, Simon Graham, Suzanne Wetstein, Syed Ali Khurram, Xiuli Liu, Nasir Rajpoot, Mitko Veta, Francesco Ciompi (2024) LYSTO: The Lymphocyte Assessment Hackathon and Benchmark Dataset IEEE journal of biomedical and health informatics, Vol. 28, p. 1161-1172 (Article in journal) Continue to DOI

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