Photo of Björn Forsberg

Björn Forsberg

Assistant Professor

Structural bioinformatics studies biology through data. We develop and use new tools to study cryo-EM reconstructions and data to understand molecular life.

About the research

In the lab, we use spatial filtering and metrics of local correlation to estimate the source of variation in ensemble data. We apply this directly to distinguish sources of variation in cryo-electron microscopy data, attribute it to causal mechanisms and describe molecular biology better than previously possible.

V-ATPase colored by heterogeneity.
Structural biology helps us understand how life works at the molecular level. It does this by showing us the three-dimensional form and function of small biological molecular machines such as proteins and DNA. This knowledge is crucial for understanding how our bodies work and for creating new medicines. One of the most important tools in structural biology is called cryo-electron microscopy (cryo-EM) and uses powerful computers to create 3D models of molecules. Cryo-EM can now also see protein inside cells, study how cells function in much greater detail, and understand how proteins function and how cells react to viruses and bacteria. This can greatly improve our understanding of biology and help us develop better drugs. For cryo-EM to be able to carry out ever larger and more in-depth investigations, however, new calculation tools are needed that better understand the enormous amounts of data that are input and can carry out faster and more systematic investigations. By extension, this can create new diagnostic methods that can see how the body heals and regenerates after injuries or non-genetic diseases such as Alzheimer's, which is already studied with the help of cryo-EM by seeing how molecules get the wrong shape in tissue taken from patients.

Open positions

The lab is actively recruiting on both graduate and post-graduate levels

PhD students

We are looking to recruit a PhD position to lead development on new methods to analyse 3D reconstructions of biomolecules composed using 2D electron microscopy images.

Click here to read more and apply.
Deadline: Oct 2nd 2024

Postdoc positions

Cryo-EM processing is rapidly evolving to use machine learning. We are looking to contribute to a new and modern framework for cryo-EM processing, in collaboration with another lab.

Click here to read more and apply.
Deadline: Sep 30th 2024




Masters students

Master students interested in biological applications of statistical models, machine learning, molecular structure, bioinformatics, or microscopy are encouraged to inquire about diploma projects directly. Please include brief CV and motivation. 

Convey your interest here

News

Publications

Selected publications

Cover of publication ''
Björn O. Forsberg, Pranav N. M. Shah, Alister Burt (2023)

Nature Communications , Vol.14 Continue to DOI

Cover of publication ''
Jasenko Zivanov, Takanori Nakane, Björn O Forsberg, Dari Kimanius, Wim JH Hagen, Erik Lindahl, Sjors HW Scheres (2018)

eLIFE , Vol.7 Continue to DOI

Cover of publication ''
Dari Kimanius, Björn O Forsberg, Sjors HW Scheres, Erik Lindahl (2016)

eLIFE , Vol.5 Continue to DOI

Latest publications

2023

Björn O. Forsberg, Pranav N. M. Shah, Alister Burt (2023) A robust normalized local filter to estimate compositional heterogeneity directly from cryo-EM maps Nature Communications, Vol. 14 (Article in journal) Continue to DOI

2022

Bjoern O. Forsberg (2022) The structure and evolutionary diversity of the fungal E3-binding protein bioRxiv (Article in journal) Continue to DOI

2021

Urška Rovšnik, Yuxuan Zhuang, Björn O Forsberg, Marta Carroni, Linnea Yvonnesdotter, Rebecca J Howard, Erik Lindahl (2021) Dynamic closed states of a ligand-gated ion channel captured by cryo-EM and simulations Life Science Alliance, Vol. 4 (Article in journal) Continue to DOI

2020

B. O. Forsberg, S. Aibara, R. J. Howard, N. Mortezaei, E. Lindahl (2020) Arrangement and symmetry of the fungal E3BP-containing core of the pyruvate dehydrogenase complex Nature Communications, Vol. 11 (Article in journal) Continue to DOI

2018

Annemarie Perez Boerema, Shintaro Aibara, Bijoya Paul, Victor Tobiasson, Dari Kimanius, Björn O. Forsberg, Karin Wallden, Erik Lindahl, A. Amunts (2018) Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor Nature Plants, Vol. 4, p. 212-217 (Article in journal) Continue to DOI

Organisation

Coworkers